The ChIP-Hub Resource: Toward plantEncode.

Lan Y#, Zhao X#, Chen D*
Methods Mol Biol. 2023;2698:221-231. doi: 10.1007/978-1-0716-3354-0_14.
Abstract

Recent advances in sequencing technologies lead to the generation of an enormous amount of regulome and epigenome data in a variety of plant species. However, a comprehensive standardized resource is so far not available. In this chapter, we present ChIP-Hub, an integrative platform that has been developed based on the ENCODE standards by collecting and reanalyzing regulatory genomic datasets from 41 plant species. The ChIP-hub website is introduced in this chapter, including information on detailed steps of searching, data download, and online analyses, which facilitates users to explore ChIP-Hub. We also provide a cross-species comparison of chromatin accessibility information that gives a thorough view of evolutionary regulatory networks in plants.

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Contact

School of Life Sciences, Nanjing University
Nanjing 210023, China

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